rnaseqflow
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_fill_adapters() (rnaseqflow.cliutils.ArgFiller method)
_fill_blocksize() (rnaseqflow.cliutils.ArgFiller method)
_fill_ext() (rnaseqflow.cliutils.ArgFiller method)
_fill_fastq() (rnaseqflow.cliutils.ArgFiller method)
_fill_fastq_args() (rnaseqflow.cliutils.ArgFiller method)
_fill_quiet() (rnaseqflow.cliutils.ArgFiller method)
_fill_root() (rnaseqflow.cliutils.ArgFiller method)
_find_file_pairs() (rnaseqflow.workflow.FastQMCFTrimPairs method)
_get_direction_id() (rnaseqflow.workflow.MergeSplitFiles static method)
_get_directory_input() (rnaseqflow.cliutils.ArgFiller class method)
_get_filepath_input() (rnaseqflow.cliutils.ArgFiller class method)
_get_integer_input() (rnaseqflow.cliutils.ArgFiller class method)
_get_part_num() (rnaseqflow.workflow.MergeSplitFiles static method)
_get_sequence_id() (rnaseqflow.workflow.FastQMCFTrimPairs static method)
(rnaseqflow.workflow.MergeSplitFiles static method)
_organize_files() (rnaseqflow.workflow.MergeSplitFiles method)
A
all_subclasses() (in module rnaseqflow.cliutils)
append() (rnaseqflow.workflow.Workflow method)
ArgFiller (class in rnaseqflow.cliutils)
F
FastQMCFTrimPairs (class in rnaseqflow.workflow)
FastQMCFTrimSolo (class in rnaseqflow.workflow)
fill() (rnaseqflow.cliutils.ArgFiller method)
FindFiles (class in rnaseqflow.workflow)
firstline() (in module rnaseqflow.cliutils)
I
insert() (rnaseqflow.workflow.Workflow method)
L
logger (rnaseqflow.workflow.FastQMCFTrimPairs attribute)
(rnaseqflow.workflow.FastQMCFTrimSolo attribute)
(rnaseqflow.workflow.FindFiles attribute)
(rnaseqflow.workflow.MergeSplitFiles attribute)
(rnaseqflow.workflow.Workflow attribute)
(rnaseqflow.workflow.WorkflowStage attribute)
longhelp() (rnaseqflow.workflow.WorkflowStage class method)
M
main() (in module rnaseqflow.__main__)
MergeSplitFiles (class in rnaseqflow.workflow)
O
opts() (in module rnaseqflow.__main__)
P
pathCompleter() (rnaseqflow.cliutils.ArgFiller method)
Python Enhancement Proposals
PEP 0257
,
[1]
PEP 0257#handling-docstring-indentation
R
run() (rnaseqflow.workflow.FastQMCFTrimPairs method)
(rnaseqflow.workflow.FastQMCFTrimSolo method)
(rnaseqflow.workflow.FindFiles method)
(rnaseqflow.workflow.MergeSplitFiles method)
(rnaseqflow.workflow.Workflow method)
(rnaseqflow.workflow.WorkflowStage method)
S
set_path_complete() (rnaseqflow.cliutils.ArgFiller method)
shorthelp() (rnaseqflow.workflow.WorkflowStage class method)
spec (rnaseqflow.workflow.FastQMCFTrimPairs attribute)
(rnaseqflow.workflow.FastQMCFTrimSolo attribute)
(rnaseqflow.workflow.FindFiles attribute)
(rnaseqflow.workflow.MergeSplitFiles attribute)
(rnaseqflow.workflow.WorkflowStage attribute)
T
trim() (in module rnaseqflow.cliutils)
W
Workflow (class in rnaseqflow.workflow)
WorkflowStage (class in rnaseqflow.workflow)
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